PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G089000.1
Common NamePHAVU_009G089000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 278aa    MW: 30521.2 Da    PI: 6.8968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G089000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003492114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C++ F ++  L  H++ H
  Phvul.009G089000.1  92 FSCNYCHRKFYSSQALGGHQNAH 114
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.32E-689119No hitNo description
PROSITE profilePS5015711.40692119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
METLSYEAPF YDSLSAVETP PSPSTPLQNP QEKKQLSVEE EEEEEKETKT GTLLDLNIPG  60
DDSATECSPV LNLITCLNTD LSSENPHEPR VFSCNYCHRK FYSSQALGGH QNAHKRERSV  120
AKRGHRSASA MMAPATAFGI PFLHNHLPHY ATVASLPLHG ACINKPLGIQ AHCMIHKPPP  180
PPPSSHLSFN GFSNTIGHHH HGWSRSRPLI TQQPGIGKLT MESCHKTSRG SFGRLEAGST  240
MLNSAVNEEI SEYLVSENVS FKSSQEQKQH LDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136968.10.0hypothetical protein PHAVU_009G089000g
TrEMBLV7ATI00.0V7ATI0_PHAVU; Uncharacterized protein
STRINGGLYMA06G06750.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-37C2H2 family protein